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  5. Cba_g31898

Cba_g31898


Description : not classified & original description: none


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g31898

Target Alias Description ECC score Gene Family Method Actions
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.02 OrthoFinder output from all 47 species
Als_g08643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.26G049200.1 Ceric.26G049200 not classified & original description: pacid=50600373... 0.03 OrthoFinder output from all 47 species
Ceric.33G066600.1 Ceric.33G066600 not classified & original description: pacid=50607344... 0.03 OrthoFinder output from all 47 species
GSVIVT01037782001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
MA_6371g0010 No alias Zinc finger CCCH domain-containing protein 18... 0.02 OrthoFinder output from all 47 species
Ore_g25621 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g44098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 367 419
IPR000571 Znf_CCCH 198 218
IPR025605 OST-HTH/LOTUS_dom 250 327
No external refs found!