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  5. Cba_g27949

Cba_g27949


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g27949

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00168430 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
AT3G11130 No alias Clathrin, heavy chain 0.04 OrthoFinder output from all 47 species
Adi_g011980 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20290 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g12409 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Als_g14456 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61224 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02408 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08144 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015746 No alias heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.04 OrthoFinder output from all 47 species
Ceric.06G067200.1 Ceric.06G067200 heavy chain of clathrin triskelion & original... 0.05 OrthoFinder output from all 47 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.11 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Cre02.g101400 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Dac_g02387 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g10505 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024708001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder output from all 47 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
LOC_Os11g01380.1 LOC_Os11g01380 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Len_g11569 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
MA_641648g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_8471497g0010 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16662 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g13808 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29284 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder output from all 47 species
Solyc03g096000.3.1 Solyc03g096000 heavy chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species
Solyc05g052510.4.1 Solyc05g052510 heavy chain of clathrin triskelion 0.07 OrthoFinder output from all 47 species
Solyc06g051310.3.1 Solyc06g051310 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Spa_g09457 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17793 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08699 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.08 OrthoFinder output from all 47 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.07 OrthoFinder output from all 47 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.07 OrthoFinder output from all 47 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0007088 regulation of mitotic nuclear division IEP HCCA
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP HCCA
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0010965 regulation of mitotic sister chromatid separation IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0031577 spindle checkpoint signaling IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
BP GO:0033046 negative regulation of sister chromatid segregation IEP HCCA
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP HCCA
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045839 negative regulation of mitotic nuclear division IEP HCCA
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP HCCA
BP GO:0045930 negative regulation of mitotic cell cycle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0051784 negative regulation of nuclear division IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
BP GO:0051985 negative regulation of chromosome segregation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071173 spindle assembly checkpoint signaling IEP HCCA
BP GO:0071174 mitotic spindle checkpoint signaling IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
BP GO:1905818 regulation of chromosome separation IEP HCCA
BP GO:1905819 negative regulation of chromosome separation IEP HCCA
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 216 356
IPR000547 Clathrin_H-chain/VPS_repeat 660 802
IPR000547 Clathrin_H-chain/VPS_repeat 73 198
IPR000547 Clathrin_H-chain/VPS_repeat 515 654
IPR000547 Clathrin_H-chain/VPS_repeat 367 504
No external refs found!