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  5. Cba_g24963

Cba_g24963


Description : mitochondrial RNA exonuclease & original description: none


Gene families : OG0005289 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005289_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24963
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT3G52050 No alias 5'-3' exonuclease family protein 0.02 OrthoFinder output from all 47 species
Dde_g25212 No alias mitochondrial RNA exonuclease & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00923 No alias mitochondrial RNA exonuclease & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038635_P002 Zm00001e038635 mitochondrial exonuclease 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR020045 DNA_polI_H3TH 280 375
IPR020046 5-3_exonucl_a-hlix_arch_N 104 276
No external refs found!