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  5. Cba_g24529

Cba_g24529


Description : circadian clock factor *(REVEILLE) & original description: none


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24529

Target Alias Description ECC score Gene Family Method Actions
AT3G09600 No alias Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g088112 RVE1 transcription factor *(REVEILLE) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15171 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Als_g23846 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g46995 No alias circadian clock factor *(REVEILLE) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05829 No alias circadian clock factor *(REVEILLE) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g008971 RVE1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026930 CCA1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Ceric.04G087900.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.06G032400.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g06441 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11557 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22032 RVE1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16515 No alias transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026956001 No alias Multi-process regulation.circadian clock.evening element... 0.02 OrthoFinder output from all 47 species
GSVIVT01027456001 CCA1 Multi-process regulation.circadian clock.core oscillator... 0.02 OrthoFinder output from all 47 species
LOC_Os02g45670.1 LOC_Os02g45670 transcription factor (MYB-related). REVEILLE circadian... 0.05 OrthoFinder output from all 47 species
Lfl_g06603 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14125 RVE2, CIR1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Msp_g26311 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08270 No alias circadian clock factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16347 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07485 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51660 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Smo166821 No alias Multi-process regulation.circadian clock.core oscillator... 0.03 OrthoFinder output from all 47 species
Spa_g21846 No alias circadian clock factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46612 No alias circadian clock factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e021724_P005 LHY1, LHY, Zm00001e021724 transcription factor (MYB-related). circadian clock core... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 122 167
No external refs found!