Cba_g23243 (ATPRFB, HCF109)

Aliases : ATPRFB, HCF109

Description : translation peptide chain release factor *(PrfB) & original description: none

Gene families : OG0002101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002101_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g23243

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00184560	ATPRFB, HCF109,...	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
AT5G36170	ATPRFB, HCF109	high chlorophyll fluorescent 109	0.03	OrthoFinder output from all 47 species
Aev_g07867	No alias	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0252.g060375	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Cre01.g010864	ATPRFB, HCF109	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Ehy_g09038	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.02	OrthoFinder output from all 47 species
Len_g16720	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Lfl_g12599	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.02	OrthoFinder output from all 47 species
MA_10437191g0010	ATPRFB, HCF109	PrfB-type translation peptide chain release factor	0.03	OrthoFinder output from all 47 species
Msp_g44375	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Nbi_g12251	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.05	OrthoFinder output from all 47 species
Pnu_g07775	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Ppi_g03735	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Solyc01g100420.3.1	Solyc01g100420	PrfB-type translation peptide chain release factor	0.02	OrthoFinder output from all 47 species
Solyc04g025290.4.1	ATPRFB, HCF109,...	PrfB-type translation peptide chain release factor	0.03	OrthoFinder output from all 47 species
Spa_g09555	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003747	translation release factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006415	translational termination	IEA	Interproscan
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0003333	amino acid transmembrane transport	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1903825	organic acid transmembrane transport	IEP	HCCA
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005139	PCRF	119	308
IPR000352	Pep_chain_release_fac_I	320	427

External Links

No external refs found!

Cba_g23243 (ATPRFB, HCF109)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation