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  5. Cba_g22496

Cba_g22496 (PMS1)


Aliases : PMS1

Description : component *(PMS1) of MLH1-PMS1 heterodimer & original description: none


Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g22496

Target Alias Description ECC score Gene Family Method Actions
AT4G02460 PMS1 DNA mismatch repair protein, putative 0.02 OrthoFinder output from all 47 species
Aob_g21572 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene67732.t1 PMS1, Aspi01Gene67732 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR014790 MutL_C 716 886
IPR013507 DNA_mismatch_S5_2-like 223 342
No external refs found!