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  5. Cba_g20785

Cba_g20785


Description : not classified & original description: none


Gene families : OG0012787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012787_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g20785

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0007.g010880 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2943 0.03 OrthoFinder output from all 47 species
Dde_g31659 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41152 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 185 233
IPR002885 Pentatricopeptide_repeat 387 434
IPR002885 Pentatricopeptide_repeat 287 333
IPR002885 Pentatricopeptide_repeat 261 283
IPR002885 Pentatricopeptide_repeat 87 115
IPR002885 Pentatricopeptide_repeat 362 385
IPR002885 Pentatricopeptide_repeat 160 182
No external refs found!