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  5. Cba_g19310

Cba_g19310


Description : not classified & original description: none


Gene families : OG0001992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001992_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g19310

Target Alias Description ECC score Gene Family Method Actions
Adi_g076988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G076600.1 Ceric.21G076600 not classified & original description: pacid=50603568... 0.04 OrthoFinder output from all 47 species
Dac_g09710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03426 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp4g04200.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g15590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17930 ATSGS3, SGS3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g24013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g076040.3.1 Solyc09g076040 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g10770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039004_P001 Zm00001e039004 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 864 991
No external refs found!