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  5. Cba_g18567

Cba_g18567


Description : not classified & original description: none


Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g18567
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242110 evm_27.TU.AmTr_v1... ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT3G02060 No alias DEAD/DEAH box helicase, putative 0.02 OrthoFinder output from all 47 species
Adi_g007716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.13G022800.1 Ceric.13G022800 not classified & original description: pacid=50636376... 0.03 OrthoFinder output from all 47 species
Dcu_g04126 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os11g32880.1 LOC_Os11g32880 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
Len_g28141 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10436969g0010 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
Pir_g10408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006439 No alias not classified & original description: CDS=315-2762 0.03 OrthoFinder output from all 47 species
Solyc02g094590.3.1 Solyc02g094590 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
Zm00001e011170_P004 Zm00001e011170 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR003711 CarD-like/TRCF_RID 212 307
IPR011545 DEAD/DEAH_box_helicase_dom 337 495
IPR001650 Helicase_C 543 642
No external refs found!