Cba_g17505


Description : regulatory protein *(RGG) of mRNA quality control & original description: none


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17505

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00140620 evm_27.TU.AmTr_v1... RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 OrthoFinder output from all 47 species
AT5G47210 No alias Hyaluronan / mRNA binding family 0.02 OrthoFinder output from all 47 species
Adi_g054126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07534 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Aob_g01753 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Aop_g30074 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene06083.t1 Aspi01Gene06083 regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010039 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ceric.01G019400.1 Ceric.01G019400 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ceric.19G044900.1 Ceric.19G044900 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ceric.30G035000.1 Ceric.30G035000 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.31 No alias No description available 0.03 OrthoFinder output from all 47 species
Dde_g01517 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Ehy_g04740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25280 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
GSVIVT01002125001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g52390.1 LOC_Os01g52390 RGG repeats nuclear RNA binding protein A (Fragment)... 0.01 OrthoFinder output from all 47 species
Len_g12236 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13836 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Lfl_g25358 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
MA_9567870g0010 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 OrthoFinder output from all 47 species
Msp_g10018 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Msp_g15170 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Nbi_g22306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04627 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g08261 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Sam_g09394 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Sam_g19725 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Spa_g18779 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Spa_g21424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g31252 No alias regulatory protein *(RGG) of mRNA quality control &... 0.05 OrthoFinder output from all 47 species
Spa_g50119 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g51990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52288 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Tin_g05938 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Zm00001e019955_P001 Zm00001e019955 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species
Zm00001e019958_P002 Zm00001e019958 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 176 282
IPR019084 Stm1-like_N 1 76
No external refs found!