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  5. Cba_g17418

Cba_g17418 (RKP)


Aliases : RKP

Description : E3 ubiquitin ligase *(RKP) & original description: none


Gene families : OG0003375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17418

Target Alias Description ECC score Gene Family Method Actions
Adi_g011552 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g01602 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13229 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.30G032900.1 RKP, Ceric.30G032900 E3 ubiquitin ligase *(RKP) & original description:... 0.04 OrthoFinder output from all 47 species
Ehy_g18147 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08871 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05025 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.04 OrthoFinder output from all 47 species
MA_61184g0010 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp6g14830.1 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g15472 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08940 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13055 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29957 No alias E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g054140.4.1 RKP, Solyc04g054140 E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
InterPro domains Description Start Stop
IPR003877 SPRY_dom 149 267
IPR045737 RKP_N 11 138
No external refs found!