Cba_g16817 (RAP2.4)

Aliases : RAP2.4

Description : subgroup ERF-I transcription factor & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g16817
Cluster	HCCA: Cluster_282

Target	Alias	Description	ECC score	Gene Family Method
AT1G43160	RAP2.6	related to AP2 6	0.02	OrthoFinder output from all 47 species
AT1G44830	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT3G61630	CRF6	cytokinin response factor 6	0.03	OrthoFinder output from all 47 species
AT4G13620	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT4G27950	CRF4	cytokinin response factor 4	0.03	OrthoFinder output from all 47 species
Aev_g10949	ERF110	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g12610	DEAR1, CEJ1, ATERF#011	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Aev_g19208	DEAR1, CEJ1, ATERF#011	subgroup ERF-II transcription factor *(ERF19/20) &...	0.03	OrthoFinder output from all 47 species
Aev_g28707	ORA47	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g33038	DEAR1, CEJ1, ATERF#011	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g44036	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g49009	ORA47	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g05905	No alias	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g21941	RAP2.1	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.02	OrthoFinder output from all 47 species
Als_g49053	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Als_g51447	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g54778	DEAR2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g29381	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aop_g38999	ORA47	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g70736	DREB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene34453.t1	Aspi01Gene34453	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G053400.1	ERF7, ATERF7,...	not classified & original description: pacid=50585332...	0.03	OrthoFinder output from all 47 species
Ceric.02G053500.1	ATERF3, ERF3,...	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.04G096400.1	ERF-1, ATERF-1,...	subgroup ERF-IX transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ceric.05G034500.1	DEAR2, Ceric.05G034500	not classified & original description: pacid=50578330...	0.03	OrthoFinder output from all 47 species
Ceric.07G001200.1	Ceric.07G001200	not classified & original description: pacid=50626761...	0.03	OrthoFinder output from all 47 species
Ceric.20G036000.1	ATERF8, ATERF-8,...	subgroup ERF-VIII transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dac_g23015	ERF38, ATERF38	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g22214	tny	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
LOC_Os03g08490.1	RAP2.12, LOC_Os03g08490	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os06g03670.1	DREB1A, ATCBF3,...	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
LOC_Os07g22770.1	ERF1, ATERF1,...	no description available(sp\|a0a3q7i5y9\|erfc3_sollc : 90.1)	0.02	OrthoFinder output from all 47 species
MA_16778g0010	DREB2A, DREB2	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
MA_484878g0010	No alias	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Mp7g09350.1	ERF-1, ATERF-1	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Msp_g14138	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g37745	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g02862	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g04870	No alias	subgroup ERF-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g03958	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g15653	DEAR4, RAP2.10	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Pnu_g16792	RAP2.12	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ppi_g02117	HRE1	subgroup ERF-VI transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g11929	DEAR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g13453	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15852	No alias	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.02	OrthoFinder output from all 47 species
Ppi_g41606	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g55442	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Smo38500	DREB2A, DREB2	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
Solyc01g090300.2.1	ATERF13, ERF13,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc03g093550.1.1	Solyc03g093550	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc06g051840.1.1	CRF4, Solyc06g051840	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc09g089930.3.1	ERF1, ATERF1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Spa_g17335	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g21487	RAP2.6	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g24188	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e015429_P001	Zm00001e015429	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Zm00001e023224_P001	Zm00001e023224	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Zm00001e024669_P001	ERF110, Zm00001e024669	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e027350_P001	ATERF12, ERF12,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e033537_P001	ERF1, ATERF1,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e035811_P001	PUCHI, Zm00001e035811	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e041539_P001	ERF-1, ATERF-1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	314	362

External Links

No external refs found!

Cba_g16817 (RAP2.4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation