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  5. Cba_g16549

Cba_g16549


Description : not classified & original description: none


Gene families : OG0006499 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006499_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g16549
Cluster HCCA: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00012640 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.03 OrthoFinder output from all 47 species
AT3G23700 No alias Nucleic acid-binding proteins superfamily 0.04 OrthoFinder output from all 47 species
Aev_g03265 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g04569 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g08286 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g01702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g27368 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.11G080900.1 Ceric.11G080900 not classified & original description: pacid=50596374... 0.05 OrthoFinder output from all 47 species
Cre03.g148950 No alias 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g02753 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g03799 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g07957 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g01039 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Gb_13624 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.05 OrthoFinder output from all 47 species
LOC_Os03g62780.1 LOC_Os03g62780 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g12635 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g01511 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_37826g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp6g19820.1 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.04 OrthoFinder output from all 47 species
Msp_g04843 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g02820 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40824 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g12492 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g01274 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g05108 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023855 No alias not classified & original description: CDS=194-1321 0.06 OrthoFinder output from all 47 species
Sam_g30081 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo96268 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.03 OrthoFinder output from all 47 species
Spa_g11144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18988 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23785 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006347_P003 Zm00001e006347 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 195 271
IPR003029 S1_domain 107 181
No external refs found!