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  5. Cba_g13843

Cba_g13843


Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13843

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00028940 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g020044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087231 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Als_g14335 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Als_g38803 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Aob_g14550 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g74969 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Dde_g24709 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06177 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20639 No alias BBX class-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01006333001 No alias La-related protein 1C OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g02117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07864 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
MA_114481g0010 No alias La-related protein 1B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pnu_g07242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g061960.3.1 Solyc02g061960 La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g02549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46280 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e011617_P001 Zm00001e011617 La-related protein 1B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 527 582
No external refs found!