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  5. Cba_g13382

Cba_g13382


Description : EC_3.2 glycosylase & original description: none


Gene families : OG0000312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13382

Target Alias Description ECC score Gene Family Method Actions
Aev_g24119 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008199 No alias EC_3.2 glycosylase & original description: CDS=411-1772 0.03 OrthoFinder output from all 47 species
Ehy_g09827 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026985001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
GSVIVT01028860001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
Len_g07468 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40127 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48079 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48471 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000166 No alias EC_3.2 glycosylase & original description: CDS=1-1656 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014802 No alias EC_3.2 glycosylase & original description: CDS=243-1718 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017352 No alias EC_3.2 glycosylase & original description: CDS=215-1831 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019942 No alias EC_3.2 glycosylase & original description: CDS=3510-4433 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0145.g023016 No alias EC_3.2 glycosylase & original description: CDS=674-1456 0.03 OrthoFinder output from all 47 species
Solyc05g049980.3.1 Solyc05g049980 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
Solyc09g075460.3.1 Solyc09g075460 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Spa_g14594 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11741 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021051_P001 Zm00001e021051 Probable polygalacturonase OS=Vitis vinifera... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 145 426
No external refs found!