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  5. Cba_g12613

Cba_g12613 (SKIP)


Aliases : SKIP

Description : component *(SKIP/MAC6) of MAC spliceosome-associated complex & original description: none


Gene families : OG0003767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g12613

Target Alias Description ECC score Gene Family Method Actions
Als_g09124 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Aop_g11032 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.22 SKIP RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Cre01.g051100 SKIP RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
GSVIVT01015321001 SKIP RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52250.1 SKIP, LOC_Os02g52250 component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Lfl_g12026 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Mp5g03870.1 SKIP component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016821 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Solyc12g008370.3.1 SKIP, Solyc12g008370 component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Tin_g02728 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
CC GO:0005681 spliceosomal complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR004015 SKI-int_prot_SKIP_SNW-dom 182 340
No external refs found!