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Cba_g12558 (CLPS3)


Aliases : CLPS3

Description : component *(Clp1) of Cleavage Factor II (CF-IIm) complex & original description: none


Gene families : OG0003520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g12558

Target Alias Description ECC score Gene Family Method Actions
Aob_g05110 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.04 OrthoFinder output from all 47 species
Azfi_s0125.g048588 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.07 OrthoFinder output from all 47 species
Ceric.38G063700.1 CLPS3, Ceric.38G063700 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.05 OrthoFinder output from all 47 species
Dac_g02159 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.03 OrthoFinder output from all 47 species
Dde_g25534 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.03 OrthoFinder output from all 47 species
LOC_Os02g12570.1 CLPS3, LOC_Os02g12570 component Clp1 of Cleavage Factor II (CF-IIm) complex 0.02 OrthoFinder output from all 47 species
Msp_g12143 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.03 OrthoFinder output from all 47 species
Pir_g09435 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.03 OrthoFinder output from all 47 species
Sam_g15976 No alias component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.02 OrthoFinder output from all 47 species
Solyc01g009290.4.1 CLPS3, Solyc01g009290 component Clp1 of Cleavage Factor II (CF-IIm) complex 0.05 OrthoFinder output from all 47 species
Spa_g12055 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032319 CLP1_P 135 323
IPR032324 Clp1_N 10 99
IPR010655 Clp1_C 328 439
No external refs found!