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  5. Cba_g11391

Cba_g11391


Description : plastidial RNA processing factor *(PPR287) & original description: none


Gene families : OG0007004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g11391
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT2G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g19823 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2070.g108974 No alias not classified & original description: CDS=84-746 0.03 OrthoFinder output from all 47 species
GSVIVT01012065001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.03 OrthoFinder output from all 47 species
LOC_Os02g07360.1 LOC_Os02g07360 ndhA-specific mRNA splicing factor. plastidial RNA... 0.02 OrthoFinder output from all 47 species
Len_g15159 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34115 No alias ndhA-specific mRNA splicing factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g28660.1 No alias ndhA-specific mRNA splicing factor. plastidial RNA... 0.02 OrthoFinder output from all 47 species
Ore_g05985 No alias ndhA-specific mRNA splicing factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20465 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Spa_g07815 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 432 457
IPR002885 Pentatricopeptide_repeat 465 489
IPR002885 Pentatricopeptide_repeat 499 528
IPR002885 Pentatricopeptide_repeat 247 277
IPR002885 Pentatricopeptide_repeat 288 335
IPR002885 Pentatricopeptide_repeat 180 227
IPR002885 Pentatricopeptide_repeat 355 402
IPR002885 Pentatricopeptide_repeat 530 577
No external refs found!