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Aliases : CSP41A
Description : endoribonuclease *(CSP41) & original description: none
Gene families : OG0001864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001864_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00003p00211760 | CRB, HIP1.3,... | RNA processing.organelle machineries.ribonuclease... | 0.09 | OrthoFinder output from all 47 species | |
| AMTR_s00025p00246210 | CSP41A,... | RNA processing.organelle machineries.ribonuclease... | 0.08 | OrthoFinder output from all 47 species | |
| AT1G09340 | CRB, HIP1.3, CSP41B | chloroplast RNA binding | 0.1 | OrthoFinder output from all 47 species | |
| AT3G63140 | CSP41A | chloroplast stem-loop binding protein of 41 kDa | 0.09 | OrthoFinder output from all 47 species | |
| Adi_g006651 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Adi_g020154 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g044321 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g02158 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g03824 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g04885 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g12109 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Als_g12366 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Als_g45562 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aob_g01615 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Aob_g11448 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g13529 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Aop_g69969 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene42964.t1 | CRB, HIP1.3,... | endoribonuclease *(CSP41) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene42964.t2 | CRB, HIP1.3,... | endoribonuclease *(CSP41) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0699.g082607 | CSP41A | endoribonuclease *(CSP41) & original description: CDS=152-1396 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0754.g085340 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: CDS=1-1245 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s1450.g103210 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: CDS=130-1254 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G048000.1 | CRB, HIP1.3,... | endoribonuclease *(CSP41) & original description:... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.26G018800.1 | CSP41A, Ceric.26G018800 | endoribonuclease *(CSP41) & original description:... | 0.07 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021181.14 | CRB, HIP1.3, CSP41B | RNA processing.organelle machineries.ribonuclease... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021720.14 | CRB, HIP1.3, CSP41B | RNA processing.organelle machineries.ribonuclease... | 0.03 | OrthoFinder output from all 47 species | |
| Cre10.g440050 | CSP41A | RNA processing.organelle machineries.ribonuclease... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g08562 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g14747 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g01117 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g02729 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Dde_g02854 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Dde_g14746 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ehy_g01176 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g06718 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01011082001 | CSP41A | RNA processing.organelle machineries.ribonuclease... | 0.13 | OrthoFinder output from all 47 species | |
| GSVIVT01031272001 | CRB, HIP1.3, CSP41B | RNA processing.organelle machineries.ribonuclease... | 0.11 | OrthoFinder output from all 47 species | |
| Gb_01706 | CSP41A | endoribonuclease (CSP41) | 0.08 | OrthoFinder output from all 47 species | |
| Gb_26565 | CRB, HIP1.3, CSP41B | endoribonuclease (CSP41) | 0.09 | OrthoFinder output from all 47 species | |
| Gb_37146 | CSP41A | Chloroplast stem-loop binding protein of 41 kDa a,... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os07g11110.1 | CSP41A, LOC_Os07g11110 | endoribonuclease (CSP41) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os12g23180.1 | CRB, HIP1.3,... | endoribonuclease (CSP41) | 0.11 | OrthoFinder output from all 47 species | |
| Len_g03236 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Len_g13543 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Lfl_g01195 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Lfl_g12178 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_115470g0010 | CSP41A | Chloroplast stem-loop binding protein of 41 kDa a,... | 0.07 | OrthoFinder output from all 47 species | |
| MA_196108g0010 | CRB, HIP1.3, CSP41B | endoribonuclease (CSP41) | 0.04 | OrthoFinder output from all 47 species | |
| MA_307070g0010 | CSP41A | endoribonuclease (CSP41) | 0.08 | OrthoFinder output from all 47 species | |
| MA_327596g0010 | CRB, HIP1.3, CSP41B | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g11680.1 | CRB, HIP1.3, CSP41B | endoribonuclease (CSP41) | 0.06 | OrthoFinder output from all 47 species | |
| Mp6g11330.1 | CSP41A | endoribonuclease (CSP41) | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g23904 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g36515 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Nbi_g04194 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Nbi_g07510 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ore_g07930 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g19880 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g31893 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g14125 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Pir_g14134 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g10254 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Pnu_g13713 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g01983 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ppi_g10001 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0076.g017534 | CSP41A | endoribonuclease *(CSP41) & original description: CDS=1450-2700 | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g04675 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g11377 | No alias | endoribonuclease *(CSP41) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g19736 | No alias | endoribonuclease *(CSP41) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g22990 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Smo107618 | CRB, HIP1.3, CSP41B | RNA processing.organelle machineries.ribonuclease... | 0.09 | OrthoFinder output from all 47 species | |
| Smo133157 | CSP41A | RNA processing.organelle machineries.ribonuclease... | 0.04 | OrthoFinder output from all 47 species | |
| Smo185868 | CSP41A | RNA processing.organelle machineries.ribonuclease... | 0.05 | OrthoFinder output from all 47 species | |
| Smo228849 | CRB, HIP1.3, CSP41B | RNA processing.organelle machineries.ribonuclease... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc06g073260.3.1 | CRB, HIP1.3,... | endoribonuclease (CSP41) | 0.1 | OrthoFinder output from all 47 species | |
| Solyc09g065180.3.1 | CSP41A, Solyc09g065180 | endoribonuclease (CSP41) | 0.09 | OrthoFinder output from all 47 species | |
| Spa_g10009 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g12780 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Tin_g00898 | CRB, HIP1.3, CSP41B | endoribonuclease *(CSP41) & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Tin_g08097 | CSP41A | endoribonuclease *(CSP41) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e029297_P001 | CRB, HIP1.3,... | endoribonuclease (CSP41) | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e033112_P001 | CSP41A, Zm00001e033112 | endoribonuclease (CSP41) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000041 | transition metal ion transport | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0006081 | cellular aldehyde metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
| BP | GO:0006826 | iron ion transport | IEP | HCCA |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
| BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | HCCA |
| MF | GO:0016726 | oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | HCCA |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| BP | GO:0034755 | iron ion transmembrane transport | IEP | HCCA |
| BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0050992 | dimethylallyl diphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0050993 | dimethylallyl diphosphate metabolic process | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0051745 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0110102 | ribulose bisphosphate carboxylase complex assembly | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001509 | Epimerase_deHydtase | 97 | 307 |
| No external refs found! |