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  5. Cba_g10082

Cba_g10082 (WLIM1)


Aliases : WLIM1

Description : LIM-type transcription factor & original description: none


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g10082

Target Alias Description ECC score Gene Family Method Actions
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g106595 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27190 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18839 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene35869.t1 Aspi01Gene35869 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53056.t1 Aspi01Gene53056 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62649.t1 WLIM1, Aspi01Gene62649 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g39812 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04716 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.03 OrthoFinder output from all 47 species
GSVIVT01009338001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.03 OrthoFinder output from all 47 species
LOC_Os06g13030.1 WLIM1, LOC_Os06g13030 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08756 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21254 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25943 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g14059 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g01071 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22148 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001173_P001 Zm00001e001173 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 49 103
IPR001781 Znf_LIM 151 206
No external refs found!