Cba_g09207 (AGL13)

Aliases : AGL13

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g09207

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00254030	SHP2, AGL5,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.03	OrthoFinder output from all 47 species
Ala_g28162	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g04197	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g11193	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g28471	SHP2, AGL5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g02975	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g06391	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene05611.t1	ANR1, AGL44,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene19452.t1	AGL16, Aspi01Gene19452	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene49755.t1	Aspi01Gene49755	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54037.t3	Aspi01Gene54037	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000595	No alias	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0016.g014288	No alias	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.14G038300.1	Ceric.14G038300	not classified & original description: pacid=50632897...	0.03	OrthoFinder output from all 47 species
Ceric.39G001800.1	AGL104, Ceric.39G001800	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g38953	AGL18	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01217	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g14605	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g50123	AGL3, SEP4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g27385	AGL21	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g32401	AGL10, CAL1, CAL	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01027579001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
LOC_Os01g10504.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os02g45770.1	AGL6, LOC_Os02g45770	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os04g52410.2	AGL32, TT16,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os05g11380.1	STK, AGL11,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os05g34940.1	PI, LOC_Os05g34940	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Len_g17248	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Len_g20789	SHP2, AGL5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Len_g24007	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g12321	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g25378	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Mp4g12490.1	AGL67	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Nbi_g05686	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10109	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g21770	AGL65	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g41761	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42896	AGL16	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g01594	AGL65	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g19814	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g58877	AGL30	MADS/AGL-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Pnu_g09567	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g29613	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g41504	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g61246	AGL21	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003069	No alias	not classified & original description: CDS=1-255	0.03	OrthoFinder output from all 47 species
Sam_g21681	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g48749	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo437868	AGL29	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
Spa_g04680	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00452	AGL3, SEP4	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g20318	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e011565_P001	AGL7, AP1, Zm00001e011565	MADS-box transcription factor 15 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Zm00001e014926_P001	AGL16, Zm00001e014926	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e022819_P002	AGL16, Zm00001e022819	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	30	77
IPR002487	TF_Kbox	110	191

External Links

No external refs found!

Cba_g09207 (AGL13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation