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  5. Cba_g08997

Cba_g08997


Description : component *(SF3B1) of splicing factor 3B complex & original description: none


Gene families : OG0002634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g08997

Target Alias Description ECC score Gene Family Method Actions
Ala_g02669 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Aob_g02393 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ceric.02G008400.1 Ceric.02G008400 component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cre12.g494100 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dac_g02908 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Gb_12533 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g04950.1 LOC_Os02g04950 component SF3B1 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
MA_11685g0010 No alias component SF3B1 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Mp5g19650.1 No alias component SF3B1 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000478 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Tin_g02906 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e025224_P001 Zm00001e025224 component SF3B1 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR015016 SF3b_su1 296 426
No external refs found!