Cba_g07249


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g07249

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00067180 EMB2261,... Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g054256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098989 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g110646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g25067 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24418 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03812 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05107 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06797 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06803 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07455 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07456 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18037 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18621 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18758 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g18796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19046 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19798 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22321 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28460 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30874 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g54506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g54594 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g55222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24428 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21617 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g57040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02401.t1 EMB2758, Aspi01Gene02401 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07941.t1 LPA66, Aspi01Gene07941 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08990.t1 OTP84, Aspi01Gene08990 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14355.t1 Aspi01Gene14355 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19500.t1 Aspi01Gene19500 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24967.t1 Aspi01Gene24967 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30841.t1 OTP82, Aspi01Gene30841 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38554.t1 VAC1, ECB2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44451.t1 CRR2, Aspi01Gene44451 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45256.t1 EMB2758, Aspi01Gene45256 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51368.t2 CRR22, Aspi01Gene51368 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61045.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64343.t1 Aspi01Gene64343 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72349.t1 EMB2758, Aspi01Gene72349 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05882 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06573 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07325 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16716 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19915 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35072 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67814 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g75325 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.03G043000.1 Ceric.03G043000 not classified & original description: pacid=50572819... 0.03 OrthoFinder output from all 47 species
Ceric.04G100100.1 Ceric.04G100100 not classified & original description: pacid=50630537... 0.04 OrthoFinder output from all 47 species
Ceric.14G067900.1 CRR22, Ceric.14G067900 not classified & original description: pacid=50634625... 0.03 OrthoFinder output from all 47 species
Ceric.21G051400.1 VAC1, ECB2,... not classified & original description: pacid=50603510... 0.06 OrthoFinder output from all 47 species
Ceric.22G079200.1 OTP84, Ceric.22G079200 not classified & original description: pacid=50615391... 0.03 OrthoFinder output from all 47 species
Ceric.28G059600.1 OTP84, Ceric.28G059600 not classified & original description: pacid=50569965... 0.04 OrthoFinder output from all 47 species
Ceric.28G062700.1 Ceric.28G062700 not classified & original description: pacid=50570794... 0.06 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.05 OrthoFinder output from all 47 species
Ceric.38G015500.1 Ceric.38G015500 not classified & original description: pacid=50579581... 0.05 OrthoFinder output from all 47 species
Dac_g21976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30402 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35456 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06339 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07608 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08575 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45843 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50558 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21829 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23999 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51669 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g13294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_37976 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.04 OrthoFinder output from all 47 species
LOC_Os06g41040.1 LOC_Os06g41040 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
LOC_Os11g01836.1 LOC_Os11g01836 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os11g37330.2 LOI1, MEF11,... RNA editing factor (MEF11) 0.03 OrthoFinder output from all 47 species
LOC_Os12g06070.1 LOC_Os12g06070 Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
Len_g20943 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g27681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12344 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_482767g0010 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Msp_g13272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27204 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63824 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16177 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g31411 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31871 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015410 No alias not classified & original description: CDS=1-2730 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018966 No alias not classified & original description: CDS=1-2631 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020144 No alias not classified & original description: CDS=1-1437 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021137 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-933 0.04 OrthoFinder output from all 47 species
Sam_g08130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo34638 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Solyc02g079260.2.1 Solyc02g079260 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc06g048900.1.1 Solyc06g048900 Pentatricopeptide repeat-containing protein At2g40720... 0.03 OrthoFinder output from all 47 species
Solyc06g068810.4.1 Solyc06g068810 Pentatricopeptide repeat-containing protein At5g50990... 0.03 OrthoFinder output from all 47 species
Solyc07g042760.1.1 Solyc07g042760 Pentatricopeptide repeat-containing protein At4g31070,... 0.03 OrthoFinder output from all 47 species
Solyc09g007430.1.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.04 OrthoFinder output from all 47 species
Solyc09g065710.1.1 OTP86, Solyc09g065710 RNA editing factor (OTP86) 0.02 OrthoFinder output from all 47 species
Spa_g27577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30384 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46024 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e016542_P001 Zm00001e016542 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.04 OrthoFinder output from all 47 species
Zm00001e026664_P002 Zm00001e026664 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Zm00001e032242_P001 Zm00001e032242 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
Zm00001e032485_P001 EMB2744, Zm00001e032485 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species
Zm00001e033171_P001 Zm00001e033171 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Zm00001e038850_P001 EMB2758, Zm00001e038850 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
Zm00001e040418_P001 Zm00001e040418 Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 164 188
IPR002885 Pentatricopeptide_repeat 189 236
IPR002885 Pentatricopeptide_repeat 87 135
No external refs found!