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Aliases : SNL4
Description : not classified & original description: none
Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G24190 | SNL3, ATSIN3, SIN3 | SIN3-like 3 | 0.05 | OrthoFinder output from all 47 species | |
| AT3G01320 | SNL1 | SIN3-like 1 | 0.04 | OrthoFinder output from all 47 species | |
| AT5G15020 | SNL2 | SIN3-like 2 | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17667 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g21578 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27014 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g29157 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011658 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g16029 | SNL4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.02G103800.1 | SNL4, Ceric.02G103800 | component *(SNL) of histone deacetylase machineries &... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.31G072300.1 | SNL4, Ceric.31G072300 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g18942 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g08326 | SNL3, ATSIN3, SIN3 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01032579001 | SNL2 | Chromatin organisation.histone modifications.histone... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g01020.2 | SNL4, LOC_Os05g01020 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g03517 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| Mp6g11860.1 | SNL3, ATSIN3, SIN3 | Paired amphipathic helix protein Sin3-like 3... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g06593 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g30140 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g48141 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g01419 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g09115 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14557 | No alias | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc02g067570.3.1 | SNL2, Solyc02g067570 | component SNL of histone deacetylase machineries | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g087360.4.1 | SNL2, Solyc02g087360 | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e017111_P002 | SNL4, Zm00001e017111 | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e025644_P001 | SNL4, Zm00001e025644 | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e040058_P001 | Zm00001e040058 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR031693 | Sin3_C | 23 | 147 |
| No external refs found! |