Cba_g06519

Description : mTERF-type transcription factor & original description: none

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g06519

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00239860	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00066p00157030	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00066p00157220	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s02857p00005060	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AT1G62010	No alias	Mitochondrial transcription termination factor family protein	0.02	OrthoFinder output from all 47 species
AT1G62150	No alias	Mitochondrial transcription termination factor family protein	0.02	OrthoFinder output from all 47 species
AT5G07900	No alias	Mitochondrial transcription termination factor family protein	0.02	OrthoFinder output from all 47 species
Ala_g05815	No alias	mTERF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g07281	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g08791	EMB2219	mTERF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g15618	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g18494	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22741	No alias	mTERF-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Cba_g43868	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G060600.1	Ceric.05G060600	mTERF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.20G017100.1	Ceric.20G017100	mTERF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.30G015700.1	Ceric.30G015700	mTERF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.31G027900.1	Ceric.31G027900	mTERF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g12619	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g18393	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g31230	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g02967	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g48743	PTAC15	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g47103	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07610	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
GSVIVT01028380001	No alias	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
Gb_07257	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.03	OrthoFinder output from all 47 species
LOC_Os05g33440.1	LOC_Os05g33440	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
LOC_Os06g12070.1	LOC_Os06g12070	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Lfl_g08103	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_122549g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_3151g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_493420g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_81581g0010	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
MA_92135g0010	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Ore_g02037	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g16904	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g17587	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g20233	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g09613	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g10113	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015528	No alias	mTERF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Smo403419	No alias	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
Solyc04g011700.2.1	Solyc04g011700	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Solyc04g051880.3.1	Solyc04g051880	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Solyc04g072500.1.1	Solyc04g072500	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Spa_g04981	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g30296	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g12946	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g19485	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g21097	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g24963	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	260	560

External Links

No external refs found!

Cba_g06519

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation