MA_16767g0010


Description : 27.3.22 RNA.regulation of transcription.HB,Homeobox transcription factor family Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. protodermal factor 2 (PDF2)


Gene families : OG_01_0000088 (Gene family) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_16767g0010
Cluster HCCA cluster: Cluster_354

Target Alias Description ECC score Gene Family Method Actions
AT1G05230 HDG2 homeodomain GLABROUS 2 0.06 Gene family
AT1G17920 HDG12 homeodomain GLABROUS 12 0.02 Gene family
AT3G61150 HDG1, HD-GL2-1 homeodomain GLABROUS 1 0.03 Gene family
AT4G04890 PDF2 protodermal factor 2 0.02 Gene family
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.05 Gene family
GSVIVT01013073001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
GSVIVT01027508001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
LOC_Os06g10600 Os06g0207966,... 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
LOC_Os08g08820 Os08g0187500 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Solyc01g091630.3.1 Solyc01g091630.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Solyc03g098200.3.1 Solyc03g098200.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Solyc09g066050.2.1 Solyc09g066050.2 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Solyc10g005330.3.1 Solyc10g005330.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d002234 GRMZM2G001289 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d019477 GRMZM2G109252 33.99 development.unspecified Encodes a homeobox-leucine... 0.02 Gene family
Zm00001d024701 GRMZM2G004957 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d026088 No alias 33.99 development.unspecified Encodes a homeobox-leucine... 0.02 Gene family
Zm00001d037140 GRMZM2G004334,... 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d040090 GRMZM2G026643 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Zm00001d040091 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Zm00001d049443 GRMZM2G130442 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001356 Homeobox_dom 85 127
No external refs found!