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  5. Cba_g05752

Cba_g05752 (AAc1, ACT1)


Aliases : AAc1, ACT1

Description : actin filament protein & original description: none


Gene families : OG0000179 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05752
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00109910 ACT7,... Cytoskeleton.microfilament network.actin filament protein 0.02 OrthoFinder output from all 47 species
Aev_g06578 ACT7 actin filament protein & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16802 ACT7 actin filament protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28663 ACT7 actin filament protein & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07811 ACT7 actin filament protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37499 ACT7 actin filament protein & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05245 ACT7 actin filament protein & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003099001 ACT7 Actin-1 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species
GSVIVT01033494001 ACT11 Actin-3 OS=Pisum sativum 0.02 OrthoFinder output from all 47 species
LOC_Os12g44350.1 ACT11, LOC_Os12g44350 actin filament protein 0.03 OrthoFinder output from all 47 species
Lfl_g06946 ACT7 actin filament protein & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22569 ACT7 actin filament protein & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08922 ACT11 actin filament protein & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012127 ACT7 actin filament protein & original description: CDS=1-1287 0.03 OrthoFinder output from all 47 species
Sam_g19134 No alias actin filament protein & original description: none 0.01 OrthoFinder output from all 47 species
Solyc01g104770.4.1 ACT11, Solyc01g104770 actin filament protein 0.03 OrthoFinder output from all 47 species
Solyc03g078400.3.1 ACT7, Solyc03g078400 actin filament protein 0.02 OrthoFinder output from all 47 species
Solyc10g086460.2.1 ACT4, Solyc10g086460 actin filament protein 0.03 OrthoFinder output from all 47 species
Solyc11g005330.2.1 ACT7, Solyc11g005330 actin filament protein 0.04 OrthoFinder output from all 47 species
Spa_g02411 AAc1, ACT1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17579 ACT7 actin filament protein & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20683 ACT7 acTin filament protein & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005489_P002 ACT11, Zm00001e005489 actin filament protein 0.02 OrthoFinder output from all 47 species
Zm00001e006282_P001 ACT7, Zm00001e006282 actin filament protein 0.01 OrthoFinder output from all 47 species
Zm00001e009080_P001 ACT7, Zm00001e009080 actin filament protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004000 Actin 5 377
No external refs found!