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  5. Cba_g05266

Cba_g05266 (ATLUP2, LUP2)


Aliases : ATLUP2, LUP2

Description : EC_5.4 intramolecular transferase & original description: none


Gene families : OG0002047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05266
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Ala_g24829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28633 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05686 No alias squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06696 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06990 No alias squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07397 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12100 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10453.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24548.t1 Aspi01Gene24548 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24549.t1 ATLUP2, LUP2,... EC_5.4 intramolecular transferase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24552.t1 Aspi01Gene24552 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene36059.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36060.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36061.t1 Aspi01Gene36061 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0110.g045523 ATLUP2, LUP2 squalene-hopene cyclase & original description: CDS=1-2274 0.04 OrthoFinder output from all 47 species
Dcu_g19102 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g31336 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g20110.1 No alias Dammaradiene synthase OS=Dryopteris crassirhizoma... 0.03 OrthoFinder output from all 47 species
Mp8g14150.1 LAS1 Dammaradiene synthase OS=Dryopteris crassirhizoma... 0.03 OrthoFinder output from all 47 species
Nbi_g43954 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05657 No alias squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g15284 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15618 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004522 ATLUP2, LUP2 squalene-hopene cyclase & original description: CDS=1-2067 0.03 OrthoFinder output from all 47 species
Spa_g25418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37330 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46323 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44706 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
InterPro domains Description Start Stop
IPR032696 SQ_cyclase_C 327 487
IPR032696 SQ_cyclase_C 511 680
IPR032697 SQ_cyclase_N 33 319
No external refs found!