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  5. Cba_g05020

Cba_g05020 (MAC3B)


Aliases : MAC3B

Description : E3 ubiquitin protein ligase *(PUB60) & original description: none


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00212570 MAC3A,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Als_g15635 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g56991 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.06G040200.1 MAC3A, Ceric.06G040200 E3 ubiquitin protein ligase *(PUB60) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.3 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.5 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cre02.g073650 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Lfl_g03225 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.05 OrthoFinder output from all 47 species
MA_20260g0010 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Mp4g08560.1 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Ore_g09114 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17949 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017747 MAC3B E3 ubiquitin protein ligase *(PUB60) & original... 0.02 OrthoFinder output from all 47 species
Sam_g15915 No alias E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Spa_g43376 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07261 MAC3B E3 ubiquiTin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 106 141
IPR001680 WD40_repeat 200 229
IPR001680 WD40_repeat 19 56
No external refs found!