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  5. Cba_g03300

Cba_g03300 (MEE40)


Aliases : MEE40

Description : not classified & original description: none


Gene families : OG0005851 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005851_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g03300

Target Alias Description ECC score Gene Family Method Actions
Ala_g09145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16834 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01923 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g20558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32052.t1 Aspi01Gene32052 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g32172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G096400.1 Ceric.03G096400 not classified & original description: pacid=50573029... 0.03 OrthoFinder output from all 47 species
Ceric.27G070600.1 Ceric.27G070600 not classified & original description: pacid=50604908... 0.03 OrthoFinder output from all 47 species
Dcu_g10858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10998 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18950 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002605 No alias not classified & original description: CDS=1-2034 0.05 OrthoFinder output from all 47 species
Spa_g10788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 195 224
IPR002885 Pentatricopeptide_repeat 404 428
IPR002885 Pentatricopeptide_repeat 543 572
IPR002885 Pentatricopeptide_repeat 125 154
IPR002885 Pentatricopeptide_repeat 230 259
IPR002885 Pentatricopeptide_repeat 264 310
IPR002885 Pentatricopeptide_repeat 434 480
No external refs found!