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  5. Cba_g02423

Cba_g02423


Description : histone H3 variant *(CENH3) & original description: none


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g02423

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00168390 No alias Histone H3.2 OS=Pisum sativum 0.02 OrthoFinder output from all 47 species
AT5G65350 HTR11 histone 3 11 0.04 OrthoFinder output from all 47 species
Ala_g26587 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23279 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61760 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01931.t1 Aspi01Gene01931 histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01982.t1 Aspi01Gene01982 histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene02058.t1 Aspi01Gene02058 histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42452.t1 Aspi01Gene42452 histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58554.t1 Aspi01Gene58554 histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene65076.t1 Aspi01Gene65076 histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G051000.1 Ceric.14G051000 histone *(H3) & original description: pacid=50634481... 0.03 OrthoFinder output from all 47 species
Ceric.1Z286600.1 Ceric.1Z286600 not classified & original description: pacid=50632714... 0.03 OrthoFinder output from all 47 species
Dac_g01991 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g20346 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.02 OrthoFinder output from all 47 species
GSVIVT01034510001 No alias Histone H3.2 OS=Pisum sativum 0.03 OrthoFinder output from all 47 species
Lfl_g06952 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432805g0020 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
MA_475294g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_74555g0010 No alias Histone H3.2 OS=Pisum sativum (sp|p68427|h32_pea : 98.2) 0.04 OrthoFinder output from all 47 species
Mp3g11410.1 No alias histone (H3) 0.01 OrthoFinder output from all 47 species
Msp_g00861 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17199 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01691 No alias histone H3 variant *(CENH3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g41472 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55056 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007202 No alias not classified & original description: CDS=224-661 0.03 OrthoFinder output from all 47 species
Sam_g22036 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g080600.4.1 Solyc01g080600 histone (H3) 0.02 OrthoFinder output from all 47 species
Spa_g08360 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04242 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09717 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45756 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016861_P001 Zm00001e016861 histone (H3) 0.02 OrthoFinder output from all 47 species
Zm00001e019170_P001 Zm00001e019170 histone (H3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 28 152
No external refs found!