Aliases : VPS53, HIT1, ATVPS53
Description : component *(VPS53/HIT1) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none
Gene families : OG0003936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003936_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cba_g01241 | |
Cluster | HCCA: Cluster_241 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00092p00123760 | VPS53, HIT1,... | Vesicle trafficking.target membrane tethering.GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.34G024900.1 | VPS53, HIT1,... | component *(VPS53/HIT1) of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001093.14 | No alias | Vesicle trafficking.target membrane tethering.GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os01g67880.1 | VPS53, HIT1,... | component VPS53/HIT1 of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g15916 | VPS53, HIT1, ATVPS53 | component *(VPS53/HIT1) of GARP/EARP... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e018920_P001 | VPS53, HIT1,... | component VPS53/HIT1 of GARP/EARP... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007234 | Vps53_N | 3 | 425 |
No external refs found! |