MA_163g0010


Description : 20.2.2 stress.abiotic.cold Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. RARE COLD INDUCIBLE GENE 3 (RCI3)


Gene families : OG_01_0000346 (Gene family) Phylogenetic Tree(s): OG0000346_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_163g0010
Cluster HCCA cluster: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT1G05250 No alias Peroxidase superfamily protein 0.02 Gene family
AT2G39040 No alias Peroxidase superfamily protein 0.02 Gene family
AT3G01190 No alias Peroxidase superfamily protein 0.03 Gene family
GSVIVT01011017001 No alias 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
GSVIVT01017830001 No alias 26.12 misc.peroxidases Peroxidase superfamily protein 0.03 Gene family
GSVIVT01030615001 No alias 26.12 misc.peroxidases Peroxidase superfamily protein 0.03 Gene family
LOC_Os05g41990 Os05g0499300 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.01 Gene family
LOC_Os06g29470 Os06g0490400 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
LOC_Os06g46799 Os06g0681600 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
LOC_Os11g43980 Os11g0661600 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
MA_180698g0010 No alias 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.04 Gene family
MA_18523g0010 No alias 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.02 Gene family
MA_444g0010 No alias 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.04 Gene family
Smo232728 PACid_15421834 26.12 misc.peroxidases Peroxidase superfamily protein... 0.02 Gene family
Solyc05g046000.3.1 Solyc05g046000.3 26.12 misc.peroxidases Peroxidase superfamily protein 0.04 Gene family
Solyc05g046010.3.1 Solyc05g046010.3 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.02 Gene family
Solyc05g046030.3.1 Solyc05g046030.3 20.2.2 stress.abiotic.cold Peroxidase superfamily protein 0.02 Gene family
Solyc07g047740.3.1 Solyc07g047740.3 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
Solyc07g049240.3.1 Solyc07g049240.3 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
Solyc07g052510.4.1 Solyc07g052510.4 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.04 Gene family
Solyc07g052530.3.1 Solyc07g052530.3 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
Solyc07g052540.3.1 Solyc07g052540.3 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family
Solyc08g075830.3.1 Solyc08g075830.3 26.12 misc.peroxidases Peroxidase superfamily protein 0.03 Gene family
Solyc12g005370.2.1 Solyc12g005370.2 26.12 misc.peroxidases Peroxidase superfamily protein 0.03 Gene family
Solyc12g005790.2.1 Solyc12g005790.2 26.12 misc.peroxidases Peroxidase superfamily protein 0.03 Gene family
Zm00001d010064 GRMZM2G055487 26.12 misc.peroxidases Peroxidase superfamily protein 0.02 Gene family
Zm00001d014467 GRMZM2G085967 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.02 Gene family
Zm00001d023899 No alias 26.12 misc.peroxidases Peroxidase superfamily protein 0.02 Gene family
Zm00001d037410 GRMZM2G104109 26.12 misc.peroxidases Peroxidase superfamily protein 0.02 Gene family
Zm00001d038598 GRMZM2G410175 26.12 misc.peroxidases Peroxidase superfamily protein 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEA InterProScan
BP GO:0006979 response to oxidative stress IEA InterProScan
MF GO:0020037 heme binding IEA InterProScan
BP GO:0055114 oxidation-reduction process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002016 Haem_peroxidase 48 286
No external refs found!