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  5. Sam_g53163

Sam_g53163


Description : not classified & original description: none


Gene families : OG0002165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g53163

Target Alias Description ECC score Gene Family Method Actions
Adi_g045241 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Adi_g082789 No alias HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Adi_g106676 HDT3, HD2C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08649 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene22740.t1 HDA3, ATHD2A,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Pir_g21930 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
MF GO:0008531 riboflavin kinase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!