1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g52721

Sam_g52721


Description : SMARCC component *(SWI3) of chromatin remodeling complex & original description: none


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52721

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072490 CHB3, ATSWI3D,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AT1G21700 CHB4, SWI3C, ATSWI3C SWITCH/sucrose nonfermenting 3C 0.02 OrthoFinder output from all 47 species
AT2G47620 SWI3A, CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A 0.02 OrthoFinder output from all 47 species
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.02 OrthoFinder output from all 47 species
Ala_g02056 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Aob_g16327 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Aop_g08555 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Cba_g02046 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cba_g15169 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ceric.03G090000.1 CHB4, SWI3C,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Ceric.18G048000.1 SWI3A, CHB1,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Ceric.28G011200.1 CHB2, SWI3B,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Dac_g10520 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Dac_g11402 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Dac_g29366 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Dde_g00898 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Dde_g24188 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ehy_g09982 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Ehy_g12222 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ehy_g16559 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
GSVIVT01008584001 SWI3A, CHB1, ATSWI3A Chromatin organisation.chromatin remodeling... 0.06 OrthoFinder output from all 47 species
GSVIVT01008831001 CHB4, SWI3C, ATSWI3C Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Gb_22023 CHB2, SWI3B, ATSWI3B component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
LOC_Os04g40420.1 SWI3A, CHB1,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
LOC_Os11g08080.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
LOC_Os12g07730.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Len_g07560 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Len_g14234 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Lfl_g04859 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
MA_10426514g0020 CHB4, SWI3C, ATSWI3C component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Mp2g06000.1 CHB4, SWI3C, ATSWI3C component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Ore_g28434 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Pir_g01373 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Ppi_g01335 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021843 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Solyc01g109510.3.1 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Solyc04g082760.3.1 CHB2, SWI3B,... component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Solyc06g060120.3.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
Spa_g15980 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Zm00001e012143_P002 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Zm00001e018409_P001 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Zm00001e024548_P001 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061666 UFM1 ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0071568 UFM1 transferase activity IEP HCCA
BP GO:0071569 protein ufmylation IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR032451 SMARCC_C 624 656
IPR032451 SMARCC_C 673 721
IPR007526 SWIRM 143 231
IPR000433 Znf_ZZ 303 339
IPR001005 SANT/Myb 363 403
No external refs found!