Sam_g52586


Description : tRNA adenosine-methyltransferase *(TRM13) & original description: none


Gene families : OG0006177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006177_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52586
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Adi_g021130 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.02 OrthoFinder output from all 47 species
Aob_g11192 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os03g61750.1 LOC_Os03g61750 tRNA adenosine-methyltransferase (TRM13) 0.03 OrthoFinder output from all 47 species
Lfl_g30723 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.03 OrthoFinder output from all 47 species
Ore_g34020 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.02 OrthoFinder output from all 47 species
Pir_g16082 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.03 OrthoFinder output from all 47 species
Sam_g11714 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.02 OrthoFinder output from all 47 species
Spa_g18029 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007871 Methyltransferase_TRM13 255 534
IPR021721 Znf_CCCH-type_TRM13 47 75
IPR022776 TRM13/UPF0224_CHHC_Znf_dom 82 106
No external refs found!