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  5. Lfl_g30615

Lfl_g30615 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g30615

Target Alias Description ECC score Gene Family Method Actions
AT3G10360 APUM4, PUM4 pumilio 4 0.03 OrthoFinder output from all 47 species
AT3G20250 PUM5, APUM5 pumilio 5 0.02 OrthoFinder output from all 47 species
Dac_g04722 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_30040 APUM6, PUM6 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g15275 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g22833 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g005670.4.1 PUM3, APUM3,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 343 729
IPR001313 Pumilio_RNA-bd_rpt 997 1026
IPR001313 Pumilio_RNA-bd_rpt 734 768
IPR001313 Pumilio_RNA-bd_rpt 916 948
IPR001313 Pumilio_RNA-bd_rpt 806 839
IPR001313 Pumilio_RNA-bd_rpt 951 984
IPR001313 Pumilio_RNA-bd_rpt 878 913
IPR001313 Pumilio_RNA-bd_rpt 770 801
IPR001313 Pumilio_RNA-bd_rpt 849 873
No external refs found!