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  5. Sam_g52446

Sam_g52446


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52446

Target Alias Description ECC score Gene Family Method Actions
AT1G58060 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58524.t1 Aspi01Gene58524 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70473.t1 Aspi01Gene70473 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G015600.1 Ceric.06G015600 not classified & original description: pacid=50620151... 0.02 OrthoFinder output from all 47 species
Cre06.g266416 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Cre12.g492450 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01034780001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os10g33275.1 LOC_Os10g33275 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_291146g0010 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Pir_g18315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014244 No alias not classified & original description: CDS=5030-5773 0.03 OrthoFinder output from all 47 species
Smo419303 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 1285 1375
IPR007502 Helicase-assoc_dom 1097 1198
IPR001650 Helicase_C 906 1032
IPR011545 DEAD/DEAH_box_helicase_dom 623 787
No external refs found!