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  5. Sam_g52427

Sam_g52427


Description : not classified & original description: none


Gene families : OG0002169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52427

Target Alias Description ECC score Gene Family Method Actions
Als_g03127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34095.t1 Aspi01Gene34095 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000168 No alias not classified & original description: CDS=137-2176 0.02 OrthoFinder output from all 47 species
Cba_g08499 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16763 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g18339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G021400.1 Ceric.14G021400 not classified & original description: pacid=50634518... 0.03 OrthoFinder output from all 47 species
Ceric.28G070200.1 Ceric.28G070200 not classified & original description: pacid=50570322... 0.03 OrthoFinder output from all 47 species
Dac_g32442 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04798 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g21310.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g07875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002358 No alias not classified & original description: CDS=9-1268 0.04 OrthoFinder output from all 47 species
Smo439533 No alias No description available 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032954 regulation of cytokinetic process IEP HCCA
BP GO:0032955 regulation of division septum assembly IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901891 regulation of cell septum assembly IEP HCCA

No InterPro domains available for this sequence

No external refs found!