1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g51898

Sam_g51898


Description : cofactor of plastid-encoded RNA polymerase *(TAC5) & original description: none


Gene families : OG0007664 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007664_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51898
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00113950 PTAC5,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Aev_g10228 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Als_g62119 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.06 OrthoFinder output from all 47 species
Aop_g30535 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene26068.t2 PTAC5, Aspi01Gene26068 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.02 OrthoFinder output from all 47 species
Azfi_s1467.g103476 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Ceric.04G086900.1 PTAC5, Ceric.04G086900 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Dcu_g12562 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.02 OrthoFinder output from all 47 species
Dde_g24577 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Ehy_g17526 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01029077001 PTAC5 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43420.1 PTAC5, LOC_Os04g43420 TAC5 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Lfl_g15814 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Msp_g19386 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Nbi_g38958 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Ore_g08855 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021497 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.02 OrthoFinder output from all 47 species
Smo404832 PTAC5 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Solyc09g091830.4.1 PTAC5, Solyc09g091830 TAC5 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 327 384
No external refs found!