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  5. Sam_g51658

Sam_g51658


Description : ribonuclease *(RNH1) & original description: none


Gene families : OG0000567 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000567_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51658
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00062060 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Aop_g11794 No alias ribonuclease *(RNH1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12574.t1 Aspi01Gene12574 ribonuclease *(RNH1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48125.t1 Aspi01Gene48125 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0114.g046020 No alias ribonuclease *(RNH1) & original description: CDS=45-1529 0.02 OrthoFinder output from all 47 species
Pir_g17107 No alias ribonuclease *(RNH1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006374 No alias ribonuclease *(RNH1) & original description: CDS=102-1442 0.03 OrthoFinder output from all 47 species
Tin_g06582 No alias ribonuclease *(RNH1) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 216 336
IPR002156 RNaseH_domain 47 168
No external refs found!