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  5. Sam_g51522

Sam_g51522


Description : transcriptional co-activator *(BET/GTE) & original description: none


Gene families : OG0000177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000177_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51522

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00204230 NPX1,... Transcription factor GTE10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00136760 GTE4,... Transcription factor GTE4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G27260 GTE8 global transcription factor group E8 0.03 OrthoFinder output from all 47 species
AT3G52280 GTE6 general transcription factor group E6 0.02 OrthoFinder output from all 47 species
Adi_g009282 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g019334 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Adi_g020157 GTE1, GTE01, IMB1 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g023475 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g050232 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Adi_g057352 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g086860 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g087256 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Adi_g114774 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Aop_g06213 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene07823.t1 GTE4, Aspi01Gene07823 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Cba_g05911 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G026600.1 BET9, ATBET9,... transcriptional co-activator *(BET/GTE) & original... 0.01 OrthoFinder output from all 47 species
Ceric.28G020800.1 GTE4, Ceric.28G020800 transcriptional co-activator *(BET/GTE) & original... 0.04 OrthoFinder output from all 47 species
Ceric.38G016200.1 BET9, ATBET9,... transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g08588 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01008492001 NPX1 Transcription factor GTE10 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01020670001 GTE4 Transcription factor GTE4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os02g38980.1 BET9, ATBET9,... transcriptional co-activator (BET/GTE) 0.03 OrthoFinder output from all 47 species
Len_g17766 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g01559 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
MA_41068g0020 ATBET10, BET10 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Mp1g20280.1 GTE4 transcriptional co-activator (BET/GTE) 0.01 OrthoFinder output from all 47 species
Mp2g23150.1 GTE7 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g02750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16068 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Ore_g19488 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Pir_g03405 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Tin_g14012 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Tin_g31516 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e009037_P001 Zm00001e009037 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Zm00001e024513_P001 Zm00001e024513 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 211 295
IPR027353 NET_dom 355 417
No external refs found!