Description : helicase UAP56 & original description: none
Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00036p00225190 | evm_27.TU.AmTr_v1... | RNA processing.messenger ribonucleoprotein particle... | 0.04 | OrthoFinder output from all 47 species | |
AT5G11170 | No alias | DEAD/DEAH box RNA helicase family protein | 0.03 | OrthoFinder output from all 47 species | |
AT5G11200 | No alias | DEAD/DEAH box RNA helicase family protein | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01035843001 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.02 | OrthoFinder output from all 47 species | |
Gb_04230 | No alias | RNA helicase (Sub2). helicase component UAP56 of... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g36890.2 | LOC_Os01g36890 | RNA helicase (Sub2). helicase component UAP56 of... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os01g36920.2 | LOC_Os01g36920 | RNA helicase (Sub2). helicase component UAP56 of... | 0.04 | OrthoFinder output from all 47 species | |
Len_g18886 | No alias | helicase UAP56 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_99733g0010 | No alias | RNA helicase (Sub2). helicase component UAP56 of... | 0.03 | OrthoFinder output from all 47 species | |
Mp1g02350.1 | No alias | RNA helicase (Sub2). helicase component UAP56 of... | 0.01 | OrthoFinder output from all 47 species | |
Ore_g07693 | No alias | helicase UAP56 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g07151 | No alias | helicase UAP56 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g49064 | No alias | helicase UAP56 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g066060.3.1 | Solyc06g066060 | RNA helicase (Sub2). helicase component UAP56 of... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g47104 | No alias | helicase UAP56 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e026684_P001 | Zm00001e026684 | RNA helicase (Sub2). helicase component UAP56 of... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e027715_P001 | Zm00001e027715 | RNA helicase (Sub2). helicase component UAP56 of... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000347 | THO complex | IEP | HCCA |
CC | GO:0000445 | THO complex part of transcription export complex | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0008134 | transcription factor binding | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008233 | peptidase activity | IEP | HCCA |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
MF | GO:0030515 | snoRNA binding | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
MF | GO:0034511 | U3 snoRNA binding | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0051287 | NAD binding | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
MF | GO:0070403 | NAD+ binding | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No external refs found! |