Sam_g50780

Description : ligand-gated cation channel *(GLR) & original description: none

Gene families : OG0000075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g50780

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00186990	GLR2.7,...	Solute transport.channels.GLR ligand-gated cation channel	0.02	OrthoFinder output from all 47 species
AT5G48400	ATGLR1.2, GLR1.2	Glutamate receptor family protein	0.02	OrthoFinder output from all 47 species
Ala_g26161	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g38109	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0038.g026123	ATGLR3.1, GLR2,...	ligand-gated cation channel *(GLR) & original...	0.03	OrthoFinder output from all 47 species
Ceric.17G036400.1	GLR3.3,...	ligand-gated cation channel *(GLR) & original...	0.05	OrthoFinder output from all 47 species
Ceric.22G077000.1	GLR3.6,...	ligand-gated cation channel *(GLR) & original...	0.05	OrthoFinder output from all 47 species
Ceric.31G069500.1	GLR3.3,...	ligand-gated cation channel *(GLR) & original...	0.02	OrthoFinder output from all 47 species
Dde_g12728	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01029195001	GLR2.2, ATGLR2.2	Solute transport.channels.GLR ligand-gated cation channel	0.02	OrthoFinder output from all 47 species
LOC_Os04g49570.2	GLR3.3,...	ligand-gated cation channel (GLR)	0.02	OrthoFinder output from all 47 species
Len_g00747	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g28228	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g29844	ATGLR3.5, GLR6, GLR3.5	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g37768	ATGLR3.1, GLR2,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Smo166047	GLR3.3, ATGLR3.3	Solute transport.channels.GLR ligand-gated cation channel	0.03	OrthoFinder output from all 47 species
Solyc06g063180.3.1	GLR2.8,...	ligand-gated cation channel (GLR)	0.02	OrthoFinder output from all 47 species
Solyc06g063210.3.1	GLR2.8,...	ligand-gated cation channel (GLR)	0.02	OrthoFinder output from all 47 species
Spa_g02201	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g34882	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007127_P002	GLR3.3,...	ligand-gated cation channel (GLR)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt_C	177	368
IPR001638	Solute-binding_3/MltF_N	111	397

External Links

No external refs found!

Sam_g50780

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation