Sam_g50575

Description : not classified & original description: none

Gene families : OG0001535 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001535_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g50575
Cluster	HCCA: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
AT1G57720	No alias	Translation elongation factor EF1B, gamma chain	0.03	OrthoFinder output from all 47 species
Adi_g047108	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.02	OrthoFinder output from all 47 species
Aob_g14268	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.06	OrthoFinder output from all 47 species
Aop_g11146	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000829.21	No alias	Protein biosynthesis.translation elongation.eEF1B...	0.02	OrthoFinder output from all 47 species
Dac_g06348	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.03	OrthoFinder output from all 47 species
LOC_Os02g12794.3	LOC_Os02g12794	component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex	0.02	OrthoFinder output from all 47 species
LOC_Os06g37440.1	LOC_Os06g37440	component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex	0.04	OrthoFinder output from all 47 species
Len_g17738	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.03	OrthoFinder output from all 47 species
Mp7g04100.1	No alias	component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex	0.04	OrthoFinder output from all 47 species
Msp_g08318	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.06	OrthoFinder output from all 47 species
Nbi_g40134	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43931	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.02	OrthoFinder output from all 47 species
Pir_g33941	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.02	OrthoFinder output from all 47 species
Ppi_g18257	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.04	OrthoFinder output from all 47 species
Sam_g32153	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.07	OrthoFinder output from all 47 species
Sam_g33826	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.03	OrthoFinder output from all 47 species
Sam_g46603	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.09	OrthoFinder output from all 47 species
Sam_g50574	No alias	not classified & original description: none	0.14	OrthoFinder output from all 47 species
Spa_g08037	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.07	OrthoFinder output from all 47 species
Spa_g36870	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.05	OrthoFinder output from all 47 species
Tin_g02785	No alias	component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling...	0.03	OrthoFinder output from all 47 species
Zm00001e037277_P002	Zm00001e037277	component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006414	translational elongation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004129	cytochrome-c oxidase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008199	ferric iron binding	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004046	GST_C	97	185
IPR004045	Glutathione_S-Trfase_N	5	68
IPR001662	EF1B_G_C	270	375

External Links

No external refs found!

Sam_g50575

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation