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  5. Lfl_g30372

Lfl_g30372 (HCF106)


Aliases : HCF106

Description : component *(cpTatB) of thylakoid membrane Tat translocation system & original description: none


Gene families : OG0005619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g30372
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Adi_g013959 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Ala_g07834 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Aob_g02696 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Aspi01Gene06021.t1 HCF106, Aspi01Gene06021 component *(cpTatB) of thylakoid membrane Tat... 0.04 OrthoFinder output from all 47 species
Cre08.g371650 HCF106 Protein translocation.chloroplast.thylakoid membrane Tat... 0.01 OrthoFinder output from all 47 species
Dcu_g00674 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.05 OrthoFinder output from all 47 species
Dde_g06214 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Len_g14600 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.04 OrthoFinder output from all 47 species
MA_919815g0010 HCF106 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g12830.1 HCF106 HCF106 protein involved in PS-II assembly. component... 0.02 OrthoFinder output from all 47 species
Nbi_g13630 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.02 OrthoFinder output from all 47 species
Ore_g13537 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Pir_g11584 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Ppi_g07318 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004868 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.06 OrthoFinder output from all 47 species
Sam_g08783 No alias component *(cpTatB) of thylakoid membrane Tat... 0.06 OrthoFinder output from all 47 species
Solyc03g025310.3.1 HCF106, Solyc03g025310 HCF106 protein involved in PS-II assembly. component... 0.02 OrthoFinder output from all 47 species
Zm00001e008326_P002 HCF106, Zm00001e008326 HCF106 protein involved in PS-II assembly. component... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR003369 TatA/B/E 138 184
No external refs found!