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  5. Sam_g49641

Sam_g49641


Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0003443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49641
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT2G22400 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.08 OrthoFinder output from all 47 species
Adi_g022731 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ala_g19092 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene05702.t1 Aspi01Gene05702 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Azfi_s0016.g014403 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ceric.01G076100.1 Ceric.01G076100 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020562.25 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Cre03.g179860 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Ehy_g13681 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
GSVIVT01003416001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Gb_17436 No alias tRNA cytidine-methyltransferase (TRM4) 0.02 OrthoFinder output from all 47 species
LOC_Os09g29630.1 LOC_Os09g29630 tRNA cytidine-methyltransferase (TRM4) 0.09 OrthoFinder output from all 47 species
Lfl_g16441 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
MA_62876g0010 No alias tRNA cytidine-methyltransferase (TRM4) 0.02 OrthoFinder output from all 47 species
Mp3g05200.1 No alias tRNA cytidine-methyltransferase (TRM4) 0.04 OrthoFinder output from all 47 species
Smo418525 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Solyc05g051520.3.1 Solyc05g051520 tRNA cytidine-methyltransferase (TRM4) 0.08 OrthoFinder output from all 47 species
Spa_g04282 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Tin_g45505 No alias EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Zm00001e034437_P004 Zm00001e034437 tRNA cytidine-methyltransferase (TRM4) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 221 416
No external refs found!