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  5. Sam_g48985

Sam_g48985


Description : deubiquitinase *(OTU3-4) & original description: none


Gene families : OG0001848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001848_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48985
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00229870 evm_27.TU.AmTr_v1... OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Pir_g39135 No alias deubiquitinase *(OTU3-4) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003736 No alias deubiquitinase *(OTU3-4) & original description: CDS=39-1175 0.02 OrthoFinder output from all 47 species
Smo130412 No alias OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR003323 OTU_dom 257 383
No external refs found!