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  5. Sam_g48816

Sam_g48816


Description : channel-forming component *(Tom40) of outer mitochondrion membrane TOM translocation system & original description: none


Gene families : OG0002328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48816

Target Alias Description ECC score Gene Family Method Actions
AT3G20000 TOM40 translocase of the outer mitochondrial membrane 40 0.1 OrthoFinder output from all 47 species
Adi_g082046 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Ala_g01261 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Als_g15884 TOM40 channel-forming component *(Tom40) of outer... 0.04 OrthoFinder output from all 47 species
Als_g52081 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Aop_g01186 TOM40 channel-forming component *(Tom40) of outer... 0.06 OrthoFinder output from all 47 species
Aop_g32727 TOM40 channel-forming component *(Tom40) of outer... 0.02 OrthoFinder output from all 47 species
Ceric.22G037300.1 TOM40, Ceric.22G037300 channel-forming component *(Tom40) of outer... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.49 TOM40 Protein translocation.mitochondrion.outer mitochondrion... 0.01 OrthoFinder output from all 47 species
Dac_g36688 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Dcu_g11812 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
GSVIVT01038525001 TOM40 Protein translocation.mitochondrion.outer mitochondrion... 0.09 OrthoFinder output from all 47 species
LOC_Os01g16910.1 TOM40, LOC_Os01g16910 component Tom40 of outer mitochondrion membrane TOM... 0.09 OrthoFinder output from all 47 species
Len_g03704 TOM40 channel-forming component *(Tom40) of outer... 0.04 OrthoFinder output from all 47 species
MA_27666g0010 TOM40 component Tom40 of outer mitochondrion membrane TOM... 0.07 OrthoFinder output from all 47 species
Mp3g10590.1 TOM40 component Tom40 of outer mitochondrion membrane TOM... 0.02 OrthoFinder output from all 47 species
Nbi_g00868 TOM40 channel-forming component *(Tom40) of outer... 0.02 OrthoFinder output from all 47 species
Pir_g10186 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Smo403082 TOM40 Protein translocation.mitochondrion.outer mitochondrion... 0.04 OrthoFinder output from all 47 species
Solyc06g007710.4.1 TOM40, Solyc06g007710 component Tom40 of outer mitochondrion membrane TOM... 0.05 OrthoFinder output from all 47 species
Solyc06g082793.1.1 TOM40, Solyc06g082793 component Tom40 of outer mitochondrion membrane TOM... 0.06 OrthoFinder output from all 47 species
Spa_g23679 TOM40 channel-forming component *(Tom40) of outer... 0.05 OrthoFinder output from all 47 species
Spa_g29708 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Spa_g48614 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Spa_g54862 TOM40 channel-forming component *(Tom40) of outer... 0.04 OrthoFinder output from all 47 species
Tin_g01764 TOM40 channel-forming component *(Tom40) of outer... 0.02 OrthoFinder output from all 47 species
Tin_g02612 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Zm00001e025489_P003 TOM40, Zm00001e025489 component Tom40 of outer mitochondrion membrane TOM... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR027246 Porin_Euk/Tom40 51 323
No external refs found!