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  5. Sam_g48438

Sam_g48438


Description : Trihelix-type transcription factor & original description: none


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48438

Target Alias Description ECC score Gene Family Method Actions
Adi_g011691 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06719 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11380 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0343.g065731 No alias Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.35G006300.1 Ceric.35G006300 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g30439 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08505 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08613 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26898 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_32610 No alias transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
LOC_Os02g43300.1 AT-GT2, GT2,... transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Len_g03878 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19264 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_47951g0010 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Ore_g10663 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g005380.2.1 Solyc11g005380 transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Zm00001e041338_P003 AT-GT2, GT2,... transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 422 509
IPR044822 Myb_DNA-bind_4 56 142
No external refs found!